API Reference
=============

Complete API documentation for SATAY Tools modules.

CLI Module
----------

.. automodule:: satay.cli
   :members:

Core Modules
------------

.. automodule:: satay.fastq_to_bam
   :members:

.. automodule:: satay.process_satay_bams
   :members:

.. automodule:: satay.da_analysis
   :members: