SATAY Tools Documentation

SATAY Tools is a Python package for analyzing SATAY (Saturation Transposon Analysis in Yeast) transposon insertion sequencing data. This tool provides utilities for processing transposon mutagenesis datasets, including read mapping, insertion site identification, and downstream analysis of yeast fitness data.

Features

• Process FASTQ files from transposon sequencing experiments

• Map transposon insertion sites to yeast genome

• Count and analyze insertion frequencies

• Perform differential analysis of insertion patterns

Contents:

• Installation
  • Prerequisites
• Quick Start Guide
• Tutorial
  • Setting Up Your Workspace
  • Pipeline Overview
  • Step 1: Align Reads
  • Step 2: Map Insertion Sites
  • Step 3: Merge Counts
  • Step 4: Statistical Analysis
• API Reference
  • CLI Module
  • Core Modules
• Changelog
  • Version 0.1.0 (2024-09-09)

Indices and tables

• Index

• Module Index

• Search Page